Text Files (.txt)
This page provides the text files (.txt tab-separated format) corresponding to 4 different levels of mapping for each microarray:

– The complete list of probesets (i.e. the "sets of probes" defined in the Affymetrix expression microarrays) that map specifically (i.e. unambiguous mapping) on each known gene of human, mouse or rat. These files are called: probesets2genes.

– The complete list of all the oligonucleotide probes from Affymetrix expression microarrays that map on one gene of human, mouse or rat (Ensembl v57). These files are called: probes2genes.

– The complete list of all the oligonucleotide probes from Affymetrix expression microarrays that map on more than one gene of human, mouse or rat (Ensembl v57). These files are called: ambigprobes2genes.

– The complete list of all the oligonucleotide probes from Affymetrix expression microarrays that are unique because they map only on one specific transcript of human, mouse or rat. These files are called: probes2transcripts.

All these files can be downloaded, just with one-click on the file needed.
Please, refer to GATExplorer as source.
Microarray Mapping on
a unique gene locus
at probeset level
Mapping on
a unique gene locus
at probe level
Ambiguous probes mapping
on >1 gene loci
Mapping on specific transcripts
at probe level
Human
HG_U133A probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U133A_2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U133B probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U133_Plus_2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95A probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95Av2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95B probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95C probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95D probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_U95E probesets2genes probes2genes ambigprobes2genes probes2transcripts
HG_Focus probesets2genes probes2genes ambigprobes2genes probes2transcripts
HC_G110 probesets2genes probes2genes ambigprobes2genes probes2transcripts
U133_X3P probesets2genes probes2genes ambigprobes2genes probes2transcripts
Human_Gene_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Human_Exon_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mouse
MG_U74A probesets2genes probes2genes ambigprobes2genes probes2transcripts
MG_U74Av2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
MG_U74B probesets2genes probes2genes ambigprobes2genes probes2transcripts
MG_U74Bv2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
MG_U74C probesets2genes probes2genes ambigprobes2genes probes2transcripts
MG_U74Cv2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mouse430_2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mouse430A_2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
MOE430A probesets2genes probes2genes ambigprobes2genes probes2transcripts
MOE430B probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mu11KsubA probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mu11KsubB probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mouse_Gene_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Mouse_Exon_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Rat
RG_U34A probesets2genes probes2genes ambigprobes2genes probes2transcripts
RG_U34B probesets2genes probes2genes ambigprobes2genes probes2transcripts
RG_U34C probesets2genes probes2genes ambigprobes2genes probes2transcripts
Rat230_2 probesets2genes probes2genes ambigprobes2genes probes2transcripts
RAE230A probesets2genes probes2genes ambigprobes2genes probes2transcripts
RAE230B probesets2genes probes2genes ambigprobes2genes probes2transcripts
RN_U34 probesets2genes probes2genes ambigprobes2genes probes2transcripts
RT_U34 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Rat_Gene_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
Rat_Exon_1.0 probesets2genes probes2genes ambigprobes2genes probes2transcripts
– The table below provides the COMPLETE list of oligonucleotide probes from Affymetrix exon microarrays that map in one or more transcripts of specific genes. These files are called: probes2genesplustranscripts.

Human_Exon_1.0 Mouse_Exon_1.0 Rat_Exon_1.0
probes2genesplustranscripts probes2genesplustranscripts probes2genesplustranscripts